config.json

{
  "alphabet_size": {
    "methylation": 66,
    "rnaseq": 66
  },
  "architectures": [
    "MOJO"
  ],
  "attention_maps_to_save": [],
  "auto_map": {
    "AutoConfig": "mojo.MOJOConfig",
    "AutoModel": "mojo.MOJO"
  },
  "conv_init_embed_dim": 512,
  "embed_dim": 512,
  "embeddings_layers_to_save": [],
  "ffn_embed_dim": 1024,
  "filter_list": [
    512,
    512,
    512,
    512,
    512,
    512,
    512,
    512,
    512
  ],
  "fixed_sequence_length": 17152,
  "init_gene_embed_dim": 200,
  "key_size": 32,
  "model_type": "MOJO",
  "num_attention_heads": 16,
  "num_downsamples": 8,
  "num_hidden_layers_head": 1,
  "num_layers": 8,
  "project_gene_embedding": true,
  "sequence_length": 17116,
  "stem_kernel_shape": 15,
  "token_embed_dim": 256,
  "torch_dtype": "float32",
  "transformers_version": "4.51.0",
  "use_gene_embedding": true
}